Publications | Louis Faure

Faure L., Soldatov R., Kharchenko P. V., Adameyko I. (2022). scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single cell data. Bioinformatics.

Faure L., Techameena P., Hadjab S. (2022). Emergence of neuron types. Current Opinion in Cell Biology.

Akkuratova N.*, Faure L.*, Kameneva P., Kastriti M. E., Adameyko I. (* co-first author) (2022). Developmental heterogeneity of embryonic neuroendocrine chromaffin cells and their maturation dynamics. Frontiers in Endocrinology.

Kastriti M. E.*, Faure L.*, Von Ahsen D., Bouderlique T. G., Boström J., Solovieva T., Jackson C., Bronner M., Meijer D., Hadjab S., Lallemend F., Erickson A., Kaucka M., Dyachuk V., Perlmann T., Lahti L., Krivanek J., Brunet J., Fried K., Adameyko I. (* co-first author) (2022). Schwann cell precursors represent a neural crest-like state with biased multipotency. The EMBO Journal.

Kameneva P.*, Melnikova V. I.*, Kastriti M. E., Kurtova A., Kryukov E., Murtazina A., Faure L., Poverennaya I., Artemov A. V., Kalinina T. S., Kudryashov N. V., Bader M., Skoda J., Chlapek P., Curylova L., Sourada L., Neradil J., Tesarova M., Pasqualetti M., Gaspar P., Yakushov V. D., Sheftel B. I., Zikmund T., Kaiser J., Fried K., Alenina N., Voronezhskaya E. E., Adameyko I. (* co-first author) (2022). Serotonin limits generation of chromaffin cells during adrenal organ development. Nature Communications.

Bouderlique T.*, Petersen J.*, Faure L.*, Abed-Navandi D., Bouchnita A., Mueller B., Nazarov M., Englmaier L., Tesarova M., Frade P. R., Zikmund T., Koehne T., Kaiser J., Fried K., Wild C., Pantos O., Hellander A., Bythell J., Adameyko I. (* co-first author) (2022). Surface flow for colonial integration in reef-building corals. Current Biology.

Petitpr'e C.*, Faure L.*, Uhl P., Fontanet P., Filova I., Pavlinkova G., Adameyko I., Hadjab S., Lallemend F. (* co-first author) (2022). Single-cell RNA-sequencing analysis of the developing mouse inner ear identifies molecular logic of auditory neuron diversification. Nature communications.

Colin A.*, Micali G.*, Faure L., Cosentino Lagomarsino M., van Teeffelen S. (* co-first author) (2021). Two different cell-cycle processes determine the timing of cell division in Escherichia coli. eLife.

Kameneva P.*, Artemov A. V.*, Kastriti M. E., Faure L., Olsen T. K., Otte J., Erickson A., Semsch B., Andersson E. R., Ratz M., Frisén J., Tischler A. S., de Krijger R. R., Bouderlique T., Akkuratova N., Vorontsova M., Gusev O., Fried K., Sundström E., Mei S., Kogner P., Baryawno N., Kharchenko P. V., Adameyko I. (* co-first author) (2021). Single-cell transcriptomics of human embryos identifies multiple sympathoblast lineages with potential implications for neuroblastoma origin. Nature Genetics.

Zhao J., Faure L., Adameyko I., Sharpe P. T. (2020). Stem cell contributions to cementoblast differentiation in healthy periodontal ligament and periodontitis. STEM CELLS.

Klimovich A., Giacomello S., Björklund A., Faure L., Kaucka M., Giez C., Murillo-Rincon A. P., Matt A., Willoweit-Ohl D., Crupi G., de Anda J., Wong G. C. L., D'Amato M., Adameyko I., Bosch T. C. G. (2020). Prototypical pacemaker neurons interact with the resident microbiota. Proceedings of the National Academy of Sciences.

Albergante L., Mirkes E., Bac J., Chen H., Martin A., Faure L., Barillot E., Pinello L., Gorban A., Zinovyev A. (2020). Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph. Entropy.

Faure L., Wang Y., Kastriti M. E., Fontanet P., Cheung K. K. Y., Petitpré C., Wu H., Sun L. L., Runge K., Croci L., Landy M. A., Lai H. C., Consalez G. G., Chevigny A. D., Lallemend F., Adameyko I., Hadjab S. (2020). Single cell RNA sequencing identifies early diversity of sensory neurons forming via bi-potential intermediates. Nature Communications.

Woo A. C., Faure L., Dapa T., Matic I. (2018). Heterogeneity of spontaneous DNA replication errors in single isogenic Escherichia coli cells. Science Advances.